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Pathogenetic aspects of the emergence of coronavirus infection COVID-19: a literature review

Journal «MEDICINA» ¹ 2, 2025, pp.112-126 (Reviews)

Authors

Abilov P. M.
Chair for Normal and Pathological Physiology1

1 - Tashkent Medical Academy, Tashkent, Republic of Uzbekistan

Corresponding Author

Abilov Pulat; e-mail: pulatabilov1985@mail.ru

Conflict of interest

Authors have no conflict of interest.

Funding

The study had no sponsorship.

Abstract

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), emerged in December 2019 leading to staggering economic impact and human suffering. The unique structure of SARS-CoV-2 and its underlying pathogenic mechanism have caused a global pandemic. In addition to the direct damage caused by the virus, SARS-CoV-2 induces an abnormal immune response leading to a cytokine storm culminating in acute respiratory distress syndrome and other fatal diseases, posing a significant challenge to clinicians. Therefore, potential treatment should not only focus on eliminating the virus but also on alleviating or controlling acute immune/inflammatory responses. Current treatment strategies for COVID-19 include preventive measures and supportive care, while the role of the host immune/inflammatory response in disease progression has been largely ignored. Understanding the interactions between SARS-CoV-2 and its receptors, as well as the underlying pathogenesis, has proven useful for disease prevention, early recognition of disease progression, vaccine development, and interventions aimed at reducing immunopathology that have shown to reduce adverse clinical outcomes and improve prognosis. Moreover, several key mutations in the SARS-CoV-2 genome sequence result in increased host cell receptor binding affinity or induce immune escape, resulting in either increased viral transmissibility or virulence of variants harboring these mutations. The review characterizes the structural features of SARS-CoV-2, its variants, and their interactions with the immune system, highlighting the role of dysfunctional immune responses and cytokine storm in disease progression.

Key words

SARS-CoV-2, COVID-19, pathogenesis, immunity, cytokine storm

DOI

References

1. Abdullah F., Myers J., Basu D., Tintinger G., Ueckermann V., Mathebula M., et al. Decreased severity of disease during the first global omicron variant covid-19 outbreak in a large hospital in Tshwane, South Africa. Int. J. Infect. Dis. 2022; 116: 38-42, doi: 10.1016/j.ijid.2021.12.357

2. Abu-Raddad L.J., Chemaitelly H., Butt A.A. National Study Group for COVID-19 Vaccination. Effectiveness of the BNT162b2 Covid-19 vaccine against the B.1.1.7 and B.1.351 variants. N. Engl. J. Med. 2021; 385(2): 187-189, doi: 10.1056/NEJMc2104974

3. Ackermann M., Verleden S.E., Kuehnel M., Haverich A., Welte T., Laenger F., et al. Pulmonary vascular Endothelialitis, thrombosis, and angiogenesis in Covid-19. N. Engl. J. Med. 2020; 383(2): 120-128, doi: 10.1056/NEJMoa2015432

4. Bourgonje A.R., Abdulle A.E., Timens W., Hillebrands J.L., Navis G.J., Gordijn S.J., et al. Angiotensin-converting enzyme 2 (ACE2), SARS-CoV-2 and the pathophysiology of coronavirus disease 2019 (COVID-19). J. Pathol. 2020; 251(3): 228-248, doi: 10.1002/path.5471

5. Cameroni E., Bowen J.E., Rosen L.E., Saliba C., Zepeda S.K., Culap K., et al. Broadly neutralizing antibodies overcome SARS-CoV-2 Omicron antigenic shift. Nature 2022; 602(7898): 664-670, doi: 10.1038/s41586-021-04386-2

6. Campos K.R., Sacchi C.T., Abbud A., Caterino-de-Araujo A. SARS-CoV-2 variants in severely symptomatic and deceased persons who had been vaccinated against COVID-19 in São Paulo, Brazil. Rev. Panam. Salud Publica 2021; 45:e126, doi: 10.26633/RPSP.2021.126

7. Cao Z., Gao W., Bao H., Feng H., Mei S., Chen P., et al. VV116 versus Nirmatrelvir-Ritonavir for Oral treatment of Covid-19. N. Engl. J. Med. 2023; 388(5): 406-417, doi: 10.1056/NEJMoa2208822

8. Davies N.G., Abbott S., Barnard R.C., Jarvis C.I., Kucharski A.J., Munday J.D., et al. Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science 2021; 372(6538): eabg3055 doi: 10.1126/science.abg3055

9. Dejnirattisai W., Huo J., Zhou D., Zahradník J., Supasa P., Liu C., et al. SARS-CoV-2 omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses. Cell 2022; 185(3); 467-484, doi: 10.1016/j.cell.2021.12.046

10. Delgado S., Somovilla P., Ferrer-Orta C., Martínez-González B., Vázquez-Monteagudo S., Muñoz-Flores J., et al. Incipient functional SARSCoV-2 diversification identified through neural network haplotype maps. Proc. Natl. Acad. Sci. U. S. A. 2024; 121(10): e2317851121, doi: 10.1073/pnas.2317851121

11. Domizio J.D., Gulen M.F., Saidoune F., Thacker V.V., Yatim A., Sharma K., et al. The cGAS-STING pathway drives type I IFN immunopathology in COVID-19. Nature 2022; 603(7899): 145-151, doi: 10.1038/s41586-022-04421-w

12. Du L., He Y., Zhou Y., Liu S., Zheng B.J., Jiang S. The spike protein of SARS-CoV – a target for vaccine and therapeutic development. Nat. Rev. Microbiol. 2009; 7(3), 226–236. doi: 10.1038/nrmicro2090

13. Fan Y., Li X., Zhang L., Wan S., Zhang L., Zhou F. SARS-CoV-2 omicron variant: recent progress and future perspectives. Signal Transduct. Target. Ther. 2022; 7(1):141, doi: 10.1038/s41392-022-00997-x

14. Faria N.R., Mellan T.A., Whittaker C., Claro I.M., Candido D.D.S., Mishra S., et al. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil. Science 2021; 372(6544): 815-821, doi: 10.1126/science.abh2644

15. Fernández-Castañeda A., Lu P., Geraghty A.C., Song E., Lee M.H., Wood J., et al. Mild respiratory COVID can cause multi-lineage neural cell and myelin dysregulation. Cell 2022; 185(14): 2452-2468.e16, doi: 10.1016/j.cell.2022.06.008

16. Fiolet T., Kherabi Y., MacDonald C.J., Ghosn J., Peiffer-Smadja N. Comparing COVID-19 vaccines for their characteristics, efficacy and effectiveness against SARS-CoV-2 and variants of concern: a narrative review. Clin. Microbiol. Infect. 2022; 28(2): 202-221. doi: 10.1016/j.cmi.2021.10.005

17. Fisman D.N., Tuite A.R. Evaluation of the relative virulence of novel SARS-CoV-2 variants: a retrospective cohort study in Ontario, Canada. J Assoc Med Can 2021; 193(42): E1619-E1625, doi: 10.1503/cmaj.211248

18.  Forchette, L., Sebastian, W., Liu, T. A comprehensive review of COVID-19 virology, vaccines, variants, and therapeutics. Curr Med Sci. 2021; 41(6): 1037-1051, doi: 10.1007/s11596-021-2395-1

19.  Gao Y.D., Ding M., Dong X., Zhang, J.J., Kursat Azkur A., Azkur, D., et al. Risk factors for severe and critically ill COVID-19 patients: a review. Allergy 2021; 76(2): 428-455, doi: 10.1111/all.14657

20. Georg P., Astaburuaga-García R., Bonaguro L., Brumhard S., Michalick L., Lippert L.J., et al. Complement activation induces excessive T cell cytotoxicity in severe COVID-19. Cell 2022; 185(3): 493-512, doi: 10.1016/j.cell.2021.12.040

21. GeurtsvanKessel C.H., Geers D., Schmitz K.S., Mykytyn A.Z., Lamers M.M., Bogers S., et al. Divergent SARS-CoV-2 omicron-reactive T and B cell responses in COVID-19 vaccine recipients. Sci Immunol. 2022; 7(69): eabo2202, doi: 10.1126/sciimmunol.abo2202

22. Greaney A.J., Loes, A.N., Crawford K.H.D., Starr T.N., Malone K.D., Chu H.Y., et al. Comprehensive mapping of mutations in the SARS-CoV-2 receptorbinding domain that affect recognition by polyclonal human plasma antibodies. Cell Host Microbe 2021; 29(3): 463-476, doi: 10.1016/j.chom.2021.02.003

23. Greene C., Connolly R., Brennan D., Laffan A., O’Keeffe E., Zaporojan L., et al. Blood-brain barrier disruption and sustained systemic inflammation in individuals with long COVID-associated cognitive impairment. Nat. Neurosci. 2024; 27(3): 421-432, doi: 10.1038/s41593-024-01576-9

24. Gruell H., Vanshylla K., Tober-Lau P., Hillus D., Schommers P., Lehmann C., et al. mRNA booster immunization elicits potent neutralizing serum activity against the SARS-CoV-2 omicron variant. Nat. Med. 2022; 28(3): 477-480, doi: 10.1038/s41591-021-01676-0

25. Gupta A., Madhavan M.V., Sehgal K., Nair N., Mahajan S., Sehrawat T.S., et al. Extrapulmonary manifestations of COVID-19. Nat. Med. 2020; 26(7): 1017-1032, doi: 10.1038/s41591-020-0968-3

26. Hadj H.I. Covid-19 vaccines and variants of concern: a review. Rev. Med. Virol. 2022; 32(4): e2313, doi: 10.1002/rmv.2313

27. Zhou P., Yang X. L., Wang X. G., Hu B., Zhang L., Zhang W., et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020; 579(7798): 270-273, doi: 10.1038/s41586-020-2012-7